Feature agglomeration

These images how similiar features are merged together using feautre agglomeration.

Python source code: plot_digits_agglomeration.py

print __doc__


# Code source: Gael Varoqueux
# Modified for Documentation merge by Jaques Grobler
# License: BSD

import numpy as np
import pylab as pl

from sklearn import datasets, cluster
from sklearn.feature_extraction.image import grid_to_graph

digits = datasets.load_digits()
images = digits.images
X = np.reshape(images, (len(images), -1))
connectivity = grid_to_graph(*images[0].shape)

agglo = cluster.WardAgglomeration(connectivity=connectivity,
                                  n_clusters=32)

agglo.fit(X)
X_reduced = agglo.transform(X)

X_restored = agglo.inverse_transform(X_reduced)
images_restored = np.reshape(X_restored, images.shape)
pl.figure(1, figsize=(4, 3.5))
pl.clf()
pl.subplots_adjust(left=.01, right=.99, bottom=.01, top=.91)
for i in range(4):
    pl.subplot(3, 4, i+1)
    pl.imshow(images[i], cmap=pl.cm.gray,
                vmax=16, interpolation='nearest')
    pl.xticks(())
    pl.yticks(())
    if i == 1:
        pl.title('Original data')
    pl.subplot(3, 4, 4+i+1)
    pl.imshow(images_restored[i],
                cmap=pl.cm.gray, vmax=16, interpolation='nearest')
    if i == 1:
        pl.title('Agglomerated data')
    pl.xticks(())
    pl.yticks(())

pl.subplot(3, 4, 10)
pl.imshow(np.reshape(agglo.labels_, images[0].shape),
          interpolation='nearest', cmap=pl.cm.spectral)
pl.xticks(())
pl.yticks(())
pl.title('Labels')